[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 82 items for (author: torii & s)

EMDB-18942:
Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - F particle
Method: single particle / : Kumar K, Antanasijevic A

EMDB-18943:
Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - A particle
Method: single particle / : Kumar K, Antanasijevic A

EMDB-18944:
Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - E particle
Method: single particle / : Kumar K, Antanasijevic A

PDB-8r5x:
Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - F particle
Method: single particle / : Kumar K, Antanasijevic A

PDB-8r5y:
Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - A particle
Method: single particle / : Kumar K, Antanasijevic A

PDB-8r5z:
Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - E particle
Method: single particle / : Kumar K, Antanasijevic A

EMDB-29745:
Cryo-EM structure of the Mismatch Sensing Complex (I) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

EMDB-29746:
Cryo-EM structure of the Mismatch Uncoupling Complex (II) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

EMDB-29747:
Cryo-EM structure of the Wedge Alignment Complex (VIII) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

EMDB-29748:
Cryo-EM structure of the Primer Separation Complex (IX) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

EMDB-29749:
Cryo-EM structure of the Mismatch Locking Complex (III) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

EMDB-29750:
Cryo-EM structure of the Guide loop Engagement Complex (VI) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

EMDB-29751:
Cryo-EM structure of the Guide loop Engagement Complex (IV) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

EMDB-29752:
Cryo-EM structure of the Guide loop Engagement Complex (V) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

EMDB-41091:
Cryo-EM structure of the Backtracking Initiation Complex (VII) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

PDB-8g5i:
Cryo-EM structure of the Mismatch Sensing Complex (I) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

PDB-8g5j:
Cryo-EM structure of the Mismatch Uncoupling Complex (II) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

PDB-8g5k:
Cryo-EM structure of the Wedge Alignment Complex (VIII) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

PDB-8g5l:
Cryo-EM structure of the Primer Separation Complex (IX) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

PDB-8g5m:
Cryo-EM structure of the Mismatch Locking Complex (III) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

PDB-8g5n:
Cryo-EM structure of the Guide loop Engagement Complex (VI) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

PDB-8g5o:
Cryo-EM structure of the Guide loop Engagement Complex (IV) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

PDB-8g5p:
Cryo-EM structure of the Guide loop Engagement Complex (V) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

PDB-8t7e:
Cryo-EM structure of the Backtracking Initiation Complex (VII) of Human Mitochondrial DNA Polymerase Gamma
Method: single particle / : Nayak AR, Buchel G, Herbine KH, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D

EMDB-33972:
Cryo-EM structure of the SARS-CoV-2 spike protein (3-up RBD) bound to neutralizing antibody CSW1-1805
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-33973:
Cryo-EM structure of the SARS-CoV-2 spike protein (1-up RBD) bound to neutralizing antibody CSW2-1353
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-33974:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing antibody CSW2-1353
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-33975:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) with C480A mutation
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-16246:
ARE-ABCF VmlR2 bound to a 70S ribosome
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-8buu:
ARE-ABCF VmlR2 bound to a 70S ribosome
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13242:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7p7r:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13241:
E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13243:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13244:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13245:
E. faecalis 70S ribosome with P-tRNA, state IV
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7p7q:
E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7p7s:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7p7t:
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7p7u:
E. faecalis 70S ribosome with P-tRNA, state IV
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-13017:
RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
Method: single particle / : Crowe-McAuliffe C, Wilson DN

PDB-7ope:
RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
Method: single particle / : Crowe-McAuliffe C, Wilson DN

EMDB-30915:
Apo spike protein of SARS-CoV2
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30916:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody 8D2
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30917:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (8D2)-1
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30918:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (8D2)-2
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30919:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (8D2)-3
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30920:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (8D2)-4
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30921:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (2940)-1
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30922:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (2940)-2
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more